Fish lncrna database

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August undefined, 2024

WebMay 26, 2024 · A rice genome re-annotation database IC4R 2.0 harbours 3215 lncRNA loci, 6259 transcripts but without the relevant multi-omic features of them (Sang et al., … WebThe database compiled by Terai et al. (2016) contains predicted lncRNA-mRNA and lncRNA-lncRNA interaction data at transcriptome scale, but the database does not store more than one local base-pairing interaction for each lncRNA-RNA interaction. In addition, the database includes only human lncRNA-RNA interactions.

CRlncRNA: a manually curated database of cancer-related long …

WebLNCipedia is a public database for long non-coding RNA (lncRNA) sequence and annotation. The current release contains 127,802 transcripts and 56,946 genes. Literature. Currently, LNCipedia offers 2,482 manually curated lncRNA articles. Recently added literature. Tools. LNCipidia comes with some helpful tools: ... WebSearch for your lncRNAs of interest and press GO to obtain the plots. You can select at least 3 genes in both the search and reference inputs. If 3 are selected a high resolution screen is recommended. What is being displayed? LncATLAS displays the subcellular localisation for user-selected lncRNAs. popular now games for boys

LncRNAnet: a comprehensive Sus scrofa lncRNA database

Web1 day ago · The IBD-associated lncRNA Carinh protects against DSS-induced colitis. The C5orf56 locus, spanning 65.1 kb on human chromosome 5, and its ortholog Gm12216, spanning 73.7 kb on mouse chromosome 11 ... WebJan 16, 2024 · Non-alcoholic fatty liver disease (NAFLD) is one of the most prevalent chronic liver diseases worldwide with an unclear mechanism. Long non-coding RNAs (lncRNAs) have recently emerged as important regulatory molecules. To better understand NAFLD pathogenesis, lncRNA and messenger RNA (mRNA) microarrays were conducted in an … WebAbout ZFLNC (Zebrafish LncRNA Database) There is emerging evidence that lncRNAs can be involved in various critical biological processes. Zebrafish is a full-developed model … shark necklace terraria

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ncRNA Free Full-Text The lncRNA Toolkit: Databases and In

WebNov 17, 2024 · The database contains 233 fish genomes, 201 fish transcriptomes, 5841 fish mitochondrial genomes, 88 fish gene sets, 16,239 miRNAs of 65 fishes, 1,330,692 … FishDB offers web services including a search tool, BLAST, JBrowse, and PrimerServer. The gene information for noncoding RNA (ncRNA), microRNA (miRNA), UTRs, and CDSs was collected and stored in the FishDB database (Fig. 1). See more The search module enables the user to collect interesting information, such as sequences, from genomes, transcriptomes, … See more The JBrowse module enables users to visualize the 88 fish genomes [17], which is a related browser to the conventional CGI-based genome … See more The blast module performs sequence similarity search employing a web-based BLAST server [16]. Users can use nucleotide BLAST … See more The PrimerServer module helps users design primers that are particular to polymerase chain reaction experiments (PCR). We used Primer3 [18] to produce candidate primer … See more shark necklace toothWebJan 8, 2024 · Therefore, we developed a human lncRNA sets database, called LncSEA, which aimed to document a large number of available resources for human lncRNA sets and provide annotation and enrichment analyses for lncRNAs. LncSEA supports >40 000 lncRNA reference sets across 18 categories and 66 sub-categories, and covers over 50 … popular now games for girls free

"WebJan 8, 2024 · In the study of Jason E. Fish, lncRNA CCL2 regulated CCL2 expression in human vascular endothelial cells, which may contribute to the formation of atherogenesis [23]. However, there are rare studies on the biological function and molecular mechanism of CCL2 in gastric cancer. " - Fish lncrna database

Fish lncrna database

FishGET: A fish gene expression and transcriptome …

WebJan 1, 2024 · 2 State Key Laboratory of Developmental Biology of Freshwater Fish, School of Life Sciences, Hunan Normal University, Changsha, China. PMID ... we constructed … WebJan 17, 2024 · Previous reports of lncRNA in teleost fish shown that it mostly positively regulates the innate immune response. This is the first time that a non-coding RNA has been found to promote the escape ...

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WebStellaris FISH (fluorescence in situ hybridization) is an RNA visualisation method that allows simultaneous detection, localisation and quantification of individual RNA molecules, including long non-coding RNA (lncRNA), at … WebNov 2, 2024 · The classification of lncRNAs. The six types of lncRNAs include sense lncRNAs A, orange, antisense lncRNAs (aslncRNAs) B, yellow, bidirectional lncRNAs C, light green, enhancer lncRNAs …

WebOct 5, 2024 · Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of... WebThe foundation of lncRNA research is the systematic mining and annotation of lncRNA. We want to compile a comprehensive and trustworthy collection of fish lncRNAs in our …

WebStellaris FISH (fluorescence in situ hybridisation) is a RNA visualisation method that allows simultaneous detection, localization, and quantification of individual RNA molecules at … WebJan 8, 2024 · LncRNADisease 2.0 documents more than 200 000 lncRNA-disease associations. We expect that this database will continue to serve as a valuable source for potential clinical application related to lncRNAs. LncRNADisease 2.0 is freely available at http://www.rnanut.net/lncrnadisease/. Publication types Research Support, Non-U.S. …

WebMar 31, 2024 · To summarize, although fish have a significant number of independent expression profile data, there is a lack of systematic sorting of transcript information, …

WebThese traits result from multifactorial interactions and given that the largest part of the transcriptome is noncoding and the role of lncRNA in regulating myogenesis is increasing, we sought to perform an integrated analysis of mRNA and lncRNA in fish families showing divergent phenotypes for muscle yield and quality traits. shark necklace for menWebApr 8, 2024 · In PC, by utilizing the GSE15471 and GSE16515 datasets and the Database for Annotation, Visualization, and Integrated Discovery (DAVID), Wang et al. conducted a functional enrichment analysis which demonstrated that the MMP9/ITGB1-miR-29b-3p-lncRNA HCP5 network was associated with the prognosis of PC . shark needles for sewing machineWebJan 29, 2015 · Here, we used single molecule RNA FISH in single cells to characterize the sub-cellular localization patterns and abundance of 61 lncRNAs across three human cell types. shark negotiation styleWebSep 23, 2024 · Noncoding RNA–protein interaction data were firstly downloaded from the NPInter 2.0 database 67. lncRNA and protein sequences were extracted from the NONCODE database 4.0 68 and the UniProt 65 ... popular now g homepageWebMay 4, 2024 · In this study, we found that the expression of long noncoding RNA (lncRNA) negative regulator of antiviral response (NRAV) was reduced in RSV-infected patients, and overexpression of NRAV facilitated RSV production in vitro, suggesting that the reduction of NRAV in RSV infection was part of the host antiviral response. popular now geWeb(A) The location of DGUOK-AS1 in cells by the lncATLAS database. (B) DGUOK-AS1 localization was analyzed via FISH analysis. (C) LncRNA DGUOK-AS1 levels in cytoplasm and nucleus of MES-1 and Calu-1 cells were detected by qRT-PCR (D) IGF2BP2 level in NSCLC (n = 25) and normal samples (n = 25) was examined via qRT-PCR. (E) The … popular nowg homeWebNov 16, 2024 · In this update of NONCODE database, we collected high-confidence datasets of plant lncRNA and developed a pipeline to annotate lncRNAs in plants. The … popular now ge not update