WebApr 17, 2024 · CRAN Package Check Timings for r-release-linux-x86_64. Last updated on 2024-04-17 02:48:37 CEST. Timings for installing and checking packages for r-release on a system running Debian GNU/Linux testing (CPU: 2x 8 … WebJan 28, 2024 · Here, we present the ctDNAtools R package, which provides functionalities for testing minimal residual disease (MRD) and analyzing cfDNA fragmentation. MRD …
ctDNAtools: Analyze Circulating Tumor DNA Sequencing Data
Web4 A s s e s s i n g t h e U s e o f c t D n A A s A n e A r l y e n D p o i n t i n e A r l y - s t A g e D i s e A s e f r i e n D s o f c A n c e r r e s e A r c h A n n U A l M e e t i n g 2 0 2 1 Figure 1: Potential Use Cases of ctDNA in Oncology. Depicted is a time course through a patient’s cancer treatment journey and the opportunities for use of ctDNA to guide WebToggle navigation ctDNAtools 0.4.0. Get started; Reference; Changelog; Reference. Minimal Residual Disease testing. test_ctDNA() Tests the ctDNA positivity of a sample. create_background_panel() Creates a background panel from a list of bam files. create_black_list() portable hand washing station rentals nj
Not able to install packages in Bioconductor version
WebTests the ctDNA positivity of a sample. Source: R/test_ctDNA.R. Given a set of reporter mutation, this functions counts the reads matching the reporter mutations in the sample to be tested, estimates the mismatch rate for the sample to be tested, and then runs a Monte Carlo simulation test to determine whether the tested sample is positive or ... WebMar 26, 2024 · mutations: Example mutations data to use with ctDNAtools package; positivity_test: Computes a p-value of ctDNA positivity with a Monte-Carlo... simulator: A function to sample from binomial distribution; summarize_fragment_size: Summarizes fragment size in defined genomic regions; targets: Example Genomic targets to use with … WebMar 26, 2024 · mutations: Example mutations data to use with ctDNAtools package; positivity_test: Computes a p-value of ctDNA positivity with a Monte-Carlo... simulator: A function to sample from binomial distribution; summarize_fragment_size: Summarizes fragment size in defined genomic regions; targets: Example Genomic targets to use with … portable hand washing station used