WebSep 30, 2024 · We present MUSTACHE, a new method for multi-scale detection of chromatin loops from Hi-C and Micro-C contact maps. MUSTACHE employs scale-space theory, a technical advance in computer vision, to … WebJul 9, 2024 · It is based on a continuous negative binomial distribution and is highly parallelized, assigning one thread per chromosome and parallelizing further using multiple threads within a chromosome. This approach makes full use of the resources available in the last generation of multicore CPU platforms. Methods
s41467-022-29258-9 OPEN Stripenn detects architectural …
WebSimple, sparse matrix data model Fast, portable and efficient storage, powered by HDF5 Extensive command line interface, powered by Click Flexible Python API, powered by NumPy, Pandas and h5py Multiscale visualization, powered by HiGlass Theme based on minimal by orderedlist. HiGlass logo by Fritz Lekschas. WebTo get a first look at a chromosight run, you can run chromosight test, which will download a test dataset from the github repository and run chromosight detect on it. … Issues 4 - GitHub - koszullab/chromosight: Computer vision based program for ... Pull requests - GitHub - koszullab/chromosight: Computer vision … Projects - GitHub - koszullab/chromosight: Computer vision based program for ... GitHub is where people build software. More than 83 million people use GitHub … cyg changtong new material co. ltd
Multi-scale architecture of archaeal chromosomes - ScienceDirect
WebDec 5, 2024 · High-throughput chromosomal conformation capture (Hi-C)-based assays have transformed our understanding of 3D genome folding 1, 2. Based on such studies, we can distinguish at least three levels of... WebChromosight is a user-friendly python package, with minimal installation requirements. It can be applied to any contact map, independently of species, protocol or genome size. … WebNov 18, 2024 · To get a first look at a chromosight run, you can run chromosight test, which will download a test dataset from the github repository and run chromosight … cy-gb language code